PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100835.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 186aa    MW: 20031.5 Da    PI: 9.1667
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100835.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000245274123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C + F ++  L  H++ H
  XP_011100835.1 52 FECQHCRRKFANSQALGGHQNAH 74
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-44878IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.78E-64979No hitNo description
PROSITE profilePS5015711.8435279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEENSSSTRD AYEPDLQDYA PSSSVMKLFG FPVTNNNKVP MQQQNDDENK RFECQHCRRK  60
FANSQALGGH QNAHKKERQR AKRAHFVADP RRLGSTVHII SPHGTRPGSL IGPGATNSAY  120
AARFLPPTAN AVGAPQVLSG VPLRYPGGFQ LGLPRQGPPG GLGEVGPSMP VGLTDVAEGL  180
DVDLHL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100835.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100835.11e-136zinc finger protein 6-like
TrEMBLA0A2G9HNY15e-52A0A2G9HNY1_9LAMI; Uncharacterized protein
TrEMBLA0A2G9I3374e-52A0A2G9I337_9LAMI; Uncharacterized protein
STRINGMigut.O00779.1.p5e-49(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105631724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.12e-14C2H2 family protein