PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100939.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family DBB
Protein Properties Length: 185aa    MW: 20408.3 Da    PI: 6.6033
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.4e-07433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  + lfC  ++  lC+ C ++ H
  XP_011100939.1  4 LCDVCESAAAVLFCAADEAALCRACDDKVH 33
                    7*************************9998 PP
2zf-B_box292.1e-095392338
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                     ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  XP_011100939.1 53 VPRCDICENSPAFFYCEVDGSSLCLQCDMMVHVGgkrtHR 92
                    689***************************9966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-7147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.082147IPR000315B-box-type zinc finger
PfamPF006437.3E-6342IPR000315B-box-type zinc finger
CDDcd000214.38E-7345No hitNo description
SMARTSM003361.1E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.1435196IPR000315B-box-type zinc finger
PfamPF006431.4E-75392IPR000315B-box-type zinc finger
CDDcd000212.48E-75493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MRTLCDVCES AAAVLFCAAD EAALCRACDD KVHMCNKLAS RHVRVGLDEP VDVPRCDICE  60
NSPAFFYCEV DGSSLCLQCD MMVHVGGKRT HRRYLLLRQR VKFPGDKPGL TGDPAMKPLD  120
TAENKRENSQ SRKPMIEDDQ LNHTVSPVAK SDTDADVPVK MDSGMIDLNI KPHQLHGQAS  180
NKQPG
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100939.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100939.11e-135B-box zinc finger protein 19
SwissprotC0SVM54e-69BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1R3GG338e-98A0A1R3GG33_COCAP; Zinc finger, B-box
STRINGVIT_04s0023g03030.t012e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-71DBB family protein