PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011100954.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

SRS

Protein Properties

Length: 357aa MW: 38173.1 Da PI: 8.1255

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011100954.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	221.2	2.1e-68	124	282	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.........kskkqsalss 88 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaa rr+rqq+laa++++++++++e +++ +r++ + ++++l + XP_011100954.1 124 GGGISCQDCGNQAKKDCSHMRCRTCCKSRGFQCQTHVKSTWVPAAERRKRQQRLAALQQNQQQERQETQQQTHRDHsigkrqrdqNPCASNSLVC 218 5789***************************************************99999998555555555554444332226666667777 PP DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 t++++++s le ++P+evsseavfrcvrvs+vdd+e++laY+tav+igGhvfkGiLydqG+e+ XP_011100954.1 219 TRIPTSTS--GLELGNFPSEVSSEAVFRCVRVSAVDDAEDQLAYHTAVNIGGHVFKGILYDQGTES 282 77776654..577888*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.7E-65	126	281	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.1E-27	128	170	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.4E-26	233	279	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MAGFFSLGGL AATGPPQGGT HTNPDQQTTT HSNPPSQINP AESWFLFRND EISYKGFELW 60 QPQPQHHHHQ PDNFLQRGLA NPMQDLYASA GGLAVGPSRG AGFHLSTGDQ SPRSGFLMMR 120 SSGGGGISCQ DCGNQAKKDC SHMRCRTCCK SRGFQCQTHV KSTWVPAAER RKRQQRLAAL 180 QQNQQQERQE TQQQTHRDHS IGKRQRDQNP CASNSLVCTR IPTSTSGLEL GNFPSEVSSE 240 AVFRCVRVSA VDDAEDQLAY HTAVNIGGHV FKGILYDQGT ESQYMAAETS SGGGSVSAGA 300 VQQLNLVTGT SATATSAPNT SAAGGGGSAS PFLDSSLYPA PVNSFIAGTK FFPLPRS

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MAGFFSLGGL AATGPPQGGT HTNPDQQTTT HSNPPSQINP AESWFLFRND EISYKGFELW  60
QPQPQHHHHQ PDNFLQRGLA NPMQDLYASA GGLAVGPSRG AGFHLSTGDQ SPRSGFLMMR  120
SSGGGGISCQ DCGNQAKKDC SHMRCRTCCK SRGFQCQTHV KSTWVPAAER RKRQQRLAAL  180
QQNQQQERQE TQQQTHRDHS IGKRQRDQNP CASNSLVCTR IPTSTSGLEL GNFPSEVSSE  240
AVFRCVRVSA VDDAEDQLAY HTAVNIGGHV FKGILYDQGT ESQYMAAETS SGGGSVSAGA  300
VQQLNLVTGT SATATSAPNT SAAGGGGSAS PFLDSSLYPA PVNSFIAGTK FFPLPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011100954.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100954.1	0.0	protein SHORT INTERNODES
Swissprot	K4B6C9	5e-99	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A2G9HGI3	1e-156	A0A2G9HGI3_9LAMI; Uncharacterized protein
STRING	Migut.L00031.1.p	1e-128	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-77	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]