PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011100967.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NF-YB

Protein Properties

Length: 199aa MW: 21983.3 Da PI: 5.0838

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011100967.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	165.8	5.7e-52	19	111	5	97
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 d +lPianvsrimkk lP+nakisk+aketvqecvsefisfvt+eas+kcqrekrktingddllwa++tlGfe+yv plk yl+kyr +++++ XP_011100967.1 19 DSLLPIANVSRIMKKSLPTNAKISKEAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMTTLGFENYVGPLKDYLSKYRVVDRNE 111 889*************************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.5E-49	17	121	IPR009072	Histone-fold
SuperFamily	SSF47113	4.19E-38	19	124	IPR009072	Histone-fold
Pfam	PF00808	2.8E-27	22	85	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.5E-20	49	67	No hit	No description
PROSITE pattern	PS00685	0	52	68	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	5.5E-20	68	86	No hit	No description
PRINTS	PR00615	5.5E-20	87	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MTTRRTPNSP LSTTFDSPDS LLPIANVSRI MKKSLPTNAK ISKEAKETVQ ECVSEFISFV 60 TGEASEKCQR EKRKTINGDD LLWAMTTLGF ENYVGPLKDY LSKYRVVDRN EEQHGSSSPC 120 TDHDDHCQSV DKNIVLAAAG SCFQQGFYGG DYRDGGVLMD GDDLVGSGGN CDDHHQFEHG 180 NGERNMCATA CHLQHGVEW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-43	19	105	5	91	Transcription factor HapC (Eurofung)
4g92_B	2e-43	19	105	5	91	Transcription factor HapC (Eurofung)
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011100967.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100967.1	1e-150	nuclear transcription factor Y subunit B-1-like
TrEMBL	A0A2P5ALR7	2e-57	A0A2P5ALR7_PARAD; Nuclear transcription factor Y subunit B
STRING	XP_002528664.1	2e-57	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	3e-53	nuclear factor Y, subunit B3