PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011101123.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 347aa MW: 40432.2 Da PI: 6.5639

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011101123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.2	5.4e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv++yL++kv++++++l +vik+vd+yk+ePwdL++ ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ XP_011101123.1 7 VPPGFRFHPTDEELVDYYLRRKVTSRRIDL-DVIKDVDLYKIEPWDLQElcRLGTeEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 100 69**************************.9***********954544442566******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle XP_011101123.1 101 YS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 .8899****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-61	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	60.197	7	156	IPR003441	NAC domain
Pfam	PF02365	5.1E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MNSFPHVPPG FRFHPTDEEL VDYYLRRKVT SRRIDLDVIK DVDLYKIEPW DLQELCRLGT 60 EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GAPQEEGWVV CRVFKKRIAS TQKLSEHDSP IWYDDHVSFM 180 PEMESPKQHS YTNNLPCNFA YTSPSCKKEM SCLQYGSSIP HADHNQFLQL PLLESPKVLQ 240 PQLPFHMQSS SRHVHQTLDQ NFQSVLRNNN ISDQQLDDQV TTDWRVLDKF VASQLSQEEI 300 TKEISSDAYP ASEHHSNLIV RNLDKQEILG QENASTSSSS CQIDLWK

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MNSFPHVPPG FRFHPTDEEL VDYYLRRKVT SRRIDLDVIK DVDLYKIEPW DLQELCRLGT  60
EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GAPQEEGWVV CRVFKKRIAS TQKLSEHDSP IWYDDHVSFM  180
PEMESPKQHS YTNNLPCNFA YTSPSCKKEM SCLQYGSSIP HADHNQFLQL PLLESPKVLQ  240
PQLPFHMQSS SRHVHQTLDQ NFQSVLRNNN ISDQQLDDQV TTDWRVLDKF VASQLSQEEI  300
TKEISSDAYP ASEHHSNLIV RNLDKQEILG QENASTSSSS CQIDLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	7	163	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	7	163	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	7	163	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	7	163	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-50	7	163	20	174	NAC domain-containing protein 19
3swm_B	1e-50	7	163	20	174	NAC domain-containing protein 19
3swm_C	1e-50	7	163	20	174	NAC domain-containing protein 19
3swm_D	1e-50	7	163	20	174	NAC domain-containing protein 19
3swp_A	1e-50	7	163	20	174	NAC domain-containing protein 19
3swp_B	1e-50	7	163	20	174	NAC domain-containing protein 19
3swp_C	1e-50	7	163	20	174	NAC domain-containing protein 19
3swp_D	1e-50	7	163	20	174	NAC domain-containing protein 19
4dul_A	1e-50	7	163	17	171	NAC domain-containing protein 19
4dul_B	1e-50	7	163	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011101123.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101123.1	0.0	NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-137	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2G9GZR1	1e-171	A0A2G9GZR1_9LAMI; Uncharacterized protein
STRING	EOY22909	1e-168	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-129	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]