PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011101230.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 417aa    MW: 44974.3 Da    PI: 8.3658
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011101230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.8e-21212261255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  XP_011101230.1 212 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 261
                     8********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-33211270IPR001471AP2/ERF domain
SMARTSM003802.2E-37212275IPR001471AP2/ERF domain
PROSITE profilePS5103225.686212269IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23212270IPR016177DNA-binding domain
PfamPF008472.3E-14212261IPR001471AP2/ERF domain
CDDcd000182.35E-21212271No hitNo description
PRINTSPR003671.1E-11213224IPR001471AP2/ERF domain
PRINTSPR003671.1E-11235251IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MCLLKVANRR DSGDYARFPA RGNTETTTTT TTSATTSTGV VNVPIPYFHM QQQEQPDYLL  60
SAVVAPPMLS GQSQSREMSA MVTALTHVVS GQRQSGLFSG AVASSFSPGG SGNFIESPSS  120
AYSSSSSGSW TGQKRRRDRD DSVTQLSEQA QRVYRSLGES SSSVKTEPEA GTSAATPTTT  180
VAPPLPTPAA EPPPQPEYPT NSYEETGERR RKYRGVRQRP WGKWAAEIRD PHKAARVWLG  240
TFDTAEAAAR AYDEAALRFR GNRAKLNFPE NVRILPPPQP AAQSAQVAVS PPPPPNPSSS  300
FFQSTARDYW EYSQLLQSTG DYHPQQSTTL FEQMLYASSS SAAGLYSHTH ALDTSSSTSS  360
PSFFSLSTSP YPLLFSSGQT IHFTPQGSNQ ETQAGTSTSS FPAPPWTSGH YPPSSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22211272163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212ERRRKY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011101230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0492973e-56KJ049297.1 Sesamum indicum clone TilSSR_20498 microsatellite Sesame_20498 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101230.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2G9GY131e-131A0A2G9GY13_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000163061e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-26ethylene response factor 110