PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011101476.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 445aa    MW: 50507.5 Da    PI: 6.4044
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011101476.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.59.8e-25108208186
        trihelix   1 rWtkqevlaLiearremeerlrr.gk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                     +Wt++++++Li ++ ++++++ + g+             +kk++W++vsk+m e+gf++sp+qC++k+++lnkryk+++++ +k+ +++++++ +
  XP_011101476.1 108 KWTDNMIRLLIMVVYYVGDEVVSeGNdpaskkkggggalQKKGKWKSVSKVMTEKGFNVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENPS 202
                     7**************988887652446677788999999**********************************************55******** PP

        trihelix  81 yfdqle 86 
                     ++d ++
  XP_011101476.1 203 LLDTMD 208
                     ***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-21106234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEPNGIYPSM QPGMLGLEMS LRHPVPAQNP QNSQHIQQQQ QQNSPHPVVG YGRHDGDCYP  60
QTQQQGYPFA AKSKNQSLTL SDDDEPGVTA ETSADDGKRK MSPWQRMKWT DNMIRLLIMV  120
VYYVGDEVVS EGNDPASKKK GGGGALQKKG KWKSVSKVMT EKGFNVSPQQ CEDKFNDLNK  180
RYKRVNDILG KGTACRVVEN PSLLDTMDHL SPKMKEEVRK LLNSKHLFFR EMCAYHNSCG  240
HGSGASVSGV GGVDHSPPEA AAEPSQSQLQ SRQQRCLHST GNAPFPTNLN GGENEASKLA  300
KMMSDEDDED EDDDEEEDES GVGSESHETD ERSLRKRKGT SHSPLIQQLD AELVNMLQDR  360
RKSSFEKRQW MKTKLTQLDE DRVGIQYQGL ELEKQRLKWL KFSTKKEREM EREKLMNERL  420
KLENERMVLL IRQQELDLLG HDHQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011101476.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101476.10.0uncharacterized protein LOC105179522
TrEMBLA0A2G9GXC20.0A0A2G9GXC2_9LAMI; Transcription factor GT-2
STRINGEOY080791e-156(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.14e-87sequence-specific DNA binding transcription factors