PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011101525.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 437aa    MW: 50545.4 Da    PI: 6.3968
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011101525.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.44.4e-24115212186
        trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                     +Wt+ +v++Li+a++++ e+  ++            +kk++W++vsk+m+erg  +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d
  XP_011101525.1 115 KWTDTMVRLLITAVSYISEEAATEYmggmrrrllnlQKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPALLD 209
                     7**************999999886444556667777**********************************************669***9999999 PP

        trihelix  84 qle 86 
                      ++
  XP_011101525.1 210 VMD 212
                     997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-22113238No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEGNLSSGST MQGNASYGGF DLQGPMRVFH HHHHMHNSHP RQGSSVAHHM IQENFPLTMG  60
NAQDCDQLVS LAEYNKLDRG KSASDEDEPS FMEDAGDGRN DSSKGKKASP WQRVKWTDTM  120
VRLLITAVSY ISEEAATEYM GGMRRRLLNL QKKGKWKSVS KVMAERGHFV SPQQCEDKFN  180
DLNKRYKRLN EILGRGTSCE VVENPALLDV MDHISEKAKE EVRKILSSKH LHYEEMCSYH  240
NGNRLHLPPD PELQRSLRIA LMPREDHDDS DMKRHLHDDN DDAEQEAEYD DHDGSEENQA  300
IDHRAYGLPG SSMKRAKQCQ SREDFNFGSP SLDCNRAFNF QSENASGDGN LVPPEGTKTN  360
MLQKQWANQK NLQLEERRLH IQAEKLELDK ERFKWERFCR KKDRELEMMK MEIERMKLEN  420
ERMALELRQK EIGMDNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1389401KERFKWERFCRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011101525.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0552773e-56KJ055277.1 Sesamum indicum clone TilSSR_26478 microsatellite Sesame_26478 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101525.10.0uncharacterized protein LOC105179584 isoform X1
TrEMBLA0A2G9GZ520.0A0A2G9GZ52_9LAMI; Uncharacterized protein
STRINGXP_009590352.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76001830
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-142sequence-specific DNA binding transcription factors