PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011101538.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 620aa    MW: 68522.4 Da    PI: 6.6648
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011101538.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.92e-3161145187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m+ ++r+++lk+plWeevs+km+e gf+rs+k+Ckek+en+ k++k++k+g++++  ++ +t+++fdqlea
  XP_011101538.1  61 RWPRQETLALLKIRSDMDVAFRDSNLKGPLWEEVSRKMAELGFQRSAKKCKEKFENVYKYHKRTKDGRSSK--PDGKTYRFFDQLEA 145
                     8********************************************************************95..77789*******85 PP
2trihelix106.22.2e-33442527187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev+aLi++r++++ +++++  k+plWee+s++m + g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  XP_011101538.1 442 RWPKAEVQALINLRTSLDLKYQDNGPKGPLWEEISAAMGKLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 527
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.006158120IPR001005SANT/Myb domain
CDDcd122032.48E-2660125No hitNo description
PfamPF138379.4E-2160146No hitNo description
PROSITE profilePS500906.78360118IPR017877Myb-like domain
PRINTSPR012176.2E-10156172No hitNo description
PRINTSPR012176.2E-10191203No hitNo description
PRINTSPR012176.2E-10217238No hitNo description
PRINTSPR012176.2E-10384409No hitNo description
SMARTSM007172.9E-5439501IPR001005SANT/Myb domain
CDDcd122031.16E-29441506No hitNo description
PROSITE profilePS500907.445441499IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.7E-5441498IPR009057Homeodomain-like
PfamPF138371.0E-23441528No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MMLGVSGLMG SSGDGAAAGA AAETHESGGG SGGSSEVGGS SSIIPGSGVE ESERSGGGGN  60
RWPRQETLAL LKIRSDMDVA FRDSNLKGPL WEEVSRKMAE LGFQRSAKKC KEKFENVYKY  120
HKRTKDGRSS KPDGKTYRFF DQLEALENTP PNAFTPPPPR PQPPATIPMA APANAANLAL  180
PSNVTVSSTS PTPLRMLPPS TTPQTGTNQV NSSPFPPLQQ PPATAVPPQS HNFQPSYHHI  240
SMSLLSNSTS SSTSSDEDIQ RRRGRKRKWK DYFERLMKDV IQKQEELQRK FLDTLEKRER  300
DRMAREEAWR VQEMARMNRE HELLVQERSM AAAKDAAVIA FLQKVTDQHN LQIPISNNNA  360
PPGAPPMQAQ APPQNPQPAR QSPTPTPPPP PLPQQSTFPP PPEPPAQPAS APSVVTVTPN  420
KILDLSKTDN GGDNLMPASS SRWPKAEVQA LINLRTSLDL KYQDNGPKGP LWEEISAAMG  480
KLGYNRSAKR CKEKWENINK YFKKVKESNK KRPEDSKTCP YFHQLDAIYK ERARNDVPSF  540
NPGFTMKPEN PMVPIMARPE QQWPLPEQNS AMHDPDHHDN ESGNNDHEED DDEDDEDEDE  600
GGGYEIITNK QPSSVTNTAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261267RRGRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011101538.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101538.10.0trihelix transcription factor GT-2-like
TrEMBLA0A2G9GE440.0A0A2G9GE44_9LAMI; Transcription factor GT-2
STRINGXP_009618661.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.24e-74Trihelix family protein