PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011101945.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 223aa    MW: 23520 Da    PI: 9.9971
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011101945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.65.8e-10190214126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt lC +f++   C +GdrC+FaHg
  XP_011101945.1 190 FKTMLCENFSK-RSCTFGDRCHFAHG 214
                     6888*******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-102658IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-62757IPR000571Zinc finger, CCCH-type
SMARTSM003564.72754IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.3522755IPR000571Zinc finger, CCCH-type
SuperFamilySSF547916.72E-1589166IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.6E-1595164IPR004088K Homology domain, type 1
SMARTSM003226.1E-1195165IPR004087K Homology domain
PROSITE profilePS5008414.7696160IPR004088K Homology domain, type 1
CDDcd001052.71E-1298160No hitNo description
PfamPF000131.4E-1198162IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.2E-14185220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-8188219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.662189216IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-5189215IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7190214IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MMNLALSPAT RTKVVPPPIQ NGSTPATVKT KLCNKYSRTE GCKYHDKFHF AHGEWELGKP  60
IIQAQEDPRA IGAIPGCFVA RAKPPVPGPA GSFSASATTK ISVDASLAGA IIGKGGVNSK  120
QISRQMGAKL AIQEHETDPN LRNIELEGTF EQIKQASAMV RELIISIGSV GGPAKAIGGP  180
GGHATPGSNF KTMLCENFSK RSCTFGDRCH FAHGAAELRK TGI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011101945.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101945.11e-164zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ33e-78C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A2Z7BP311e-112A0A2Z7BP31_9LAMI; Zinc finger CCCH domain-containing protein 14
STRINGcassava4.1_013023m1e-109(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-60C3H family protein