PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011102220.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27186.2 Da    PI: 9.8084
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011102220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF977.8e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA ELSvLCdaeva+iifs++gklye++s
  XP_011102220.1  9 KRIENKINRQVTFAKRRNGLLKKACELSVLCDAEVALIIFSNKGKLYEFCS 59
                    79***********************************************96 PP
2K-box951.2e-31821739100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++ ++a++ +qe+ kLk+++e Lq++qRhllGedL++L  keL qLe+ L++slk+iR k++++++eq++ lq+kek+l e n+aLr+klee
  XP_011102220.1  82 QSPNNAQNNYQEYLKLKARVEVLQQSQRHLLGEDLGKLGPKELDQLETMLDTSLKQIRLKQTQHMFEQLSGLQQKEKNLMEVNRALRSKLEE 173
                     566899***********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.4E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.884161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-33281IPR002100Transcription factor, MADS-box
CDDcd002651.50E-44276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-32323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-323859IPR002100Transcription factor, MADS-box
PfamPF014863.7E-2585171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.81787177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KACELSVLCD AEVALIIFSN KGKLYEFCST  60
SSMSKTLERY HKSSYGPIEA HQSPNNAQNN YQEYLKLKAR VEVLQQSQRH LLGEDLGKLG  120
PKELDQLETM LDTSLKQIRL KQTQHMFEQL SGLQQKEKNL MEVNRALRSK LEETNAAIRE  180
TWQQGERNMP YRPLQLAQPE AFLEPLGCNN TAQIQYRLSA PNNAAENAKG MLPGWMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A5e-229217122101Developmental protein SEPALLATA 3
4ox0_B5e-229217122101Developmental protein SEPALLATA 3
4ox0_C5e-229217122101Developmental protein SEPALLATA 3
4ox0_D5e-229217122101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011102220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011102220.11e-176MADS-box protein CMB1-like
SwissprotK4BND81e-105MADS4_SOLLC; MADS-box protein 04g005320
TrEMBLA0A2G9HS331e-115A0A2G9HS33_9LAMI; MADS box transcription factor
STRINGPGSC0003DMT4000728911e-109(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.14e-86MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]