PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011102237.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 30572.9 Da    PI: 8.6612
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011102237.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF862.1e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++ rqvtfskRr+g++KK +ELSvLCda++ +i+fss+g+l ey++
  XP_011102237.1  9 KRIENNTSRQVTFSKRRAGLMKKTHELSVLCDAQIGLIVFSSKGRLTEYCT 59
                    79***********************************************96 PP
2K-box61.63.1e-21921731495
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     +e+ ++el+++k+e+ nLq ++ +++G+dL+s +++eL qLeqqLe+s+ k+R++K +ll+eq+e+l++ e  l++en+++ 
  XP_011102237.1  92 NEQVYKELTRMKNETLNLQLSLQRYKGDDLSSVQFEELTQLEQQLEHSVHKVRARKFQLLHEQLENLKRTEVLLEKENQEMY 173
                     578899************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.202161IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-39160IPR002100Transcription factor, MADS-box
CDDcd002656.33E-44276No hitNo description
SuperFamilySSF554555.23E-31282IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-28323IPR002100Transcription factor, MADS-box
PfamPF003196.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-2092175IPR002487Transcription factor, K-box
PROSITE profilePS5129714.74592184IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRGKIEVKR IENNTSRQVT FSKRRAGLMK KTHELSVLCD AQIGLIVFSS KGRLTEYCTP  60
PLSMKQIIER YVKAKGVTIP DHNNRVGPPP YNEQVYKELT RMKNETLNLQ LSLQRYKGDD  120
LSSVQFEELT QLEQQLEHSV HKVRARKFQL LHEQLENLKR TEVLLEKENQ EMYHWLMSNQ  180
IQKQAELEQQ QQQQAMAMTE LKLVEQQQPL LQNHQQLPFF GDDLQLGNLP LHTVTHSSYR  240
LQPTHPNLQD HTHHHPPLPI E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-17171169Myocyte-specific enhancer factor 2B
1tqe_Q1e-17171169Myocyte-specific enhancer factor 2B
1tqe_R1e-17171169Myocyte-specific enhancer factor 2B
1tqe_S1e-17171169Myocyte-specific enhancer factor 2B
6c9l_A1e-17171169Myocyte-specific enhancer factor 2B
6c9l_B1e-17171169Myocyte-specific enhancer factor 2B
6c9l_C1e-17171169Myocyte-specific enhancer factor 2B
6c9l_D1e-17171169Myocyte-specific enhancer factor 2B
6c9l_E1e-17171169Myocyte-specific enhancer factor 2B
6c9l_F1e-17171169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011102237.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011102237.10.0MADS-box protein defh21
RefseqXP_011102244.10.0MADS-box protein defh21
RefseqXP_011102249.10.0MADS-box protein defh21
SwissprotQ8RVL41e-127DEF21_ANTMA; MADS-box protein defh21
TrEMBLA0A2Z7AN331e-132A0A2Z7AN33_9LAMI; Uncharacterized protein
STRINGMigut.C01064.1.p1e-136(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.27e-56MIKC_MADS family protein