PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011102254.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family DBB
Protein Properties Length: 219aa    MW: 24553.1 Da    PI: 4.863
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011102254.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.84.4e-081758439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    r C+ ++e ++ l+C+ ++  lC +C  e H+       H++
  XP_011102254.1 17 RLCDFCNESKALLYCRADSARLCFNCDREVHSTnplfkkHNR 58
                    78******99*********************66777777876 PP
2zf-B_box24.65.3e-0859102342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 
                        C+ +++ + ++fC + +  lC++C  e H++    H+++p+
  XP_011102254.1  59 SLLCDSCNSSPSSIFCCSESAVLCQNCDWENHNNfksiHDRRPI 102
                     568*****************************99999**99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.4E-141461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.481461IPR000315B-box-type zinc finger
PfamPF006438.7E-71758IPR000315B-box-type zinc finger
CDDcd000218.15E-71761No hitNo description
PROSITE profilePS5011910.65157102IPR000315B-box-type zinc finger
PfamPF006433.3E-559102IPR000315B-box-type zinc finger
CDDcd000218.98E-661102No hitNo description
SMARTSM003360.1962102IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSVADQENYD FGDRGGRLCD FCNESKALLY CRADSARLCF NCDREVHSTN PLFKKHNRSL  60
LCDSCNSSPS SIFCCSESAV LCQNCDWENH NNFKSIHDRR PIEGFNGCPS VSELLNFLGL  120
EDLGKKSLVF GGGNDEGFLD LLVWETPAVV SLDDLIVSNN SVDSGLSFQA MGVPPLPKVC  180
ALFLGKICFL KIMICVFPFS SKRGCWDCTL WFFLYLWFI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011102254.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011102254.11e-159zinc finger protein CONSTANS-LIKE 13-like
SwissprotO822563e-56COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A097DC827e-94A0A097DC82_9MYRT; Zinc finger protein CONSTANS-LIKE 9
STRINGMigut.D00173.1.p1e-88(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.23e-45B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]