PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011395490.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family GATA
Protein Properties Length: 239aa    MW: 24232.4 Da    PI: 8.8565
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011395490.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.93.3e-1485118134
            GATA   1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkkg 34 
                     CsnCg+t Tp WR++  +g + LCnaCGly +k+g
  XP_011395490.1  85 CSNCGVTVTPFWRKSRaSGLP-LCNACGLYSAKNG 118
                     ***************989999.*********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-1079131IPR000679Zinc finger, GATA-type
PROSITE profilePS5011415.12979118IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-1280128No hitNo description
Gene3DG3DSA:3.30.50.103.0E-1581130IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.04E-1484131No hitNo description
PROSITE patternPS00344085110IPR000679Zinc finger, GATA-type
PfamPF003201.2E-1185118IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDAGLRPVTA DVVGKCAQAV SLWAQLLELL LRRGHGILPA SPVRPHPGPI AHPSHAKPHA  60
GPAIVSLGQD AGRKRARRSE GSRTCSNCGV TVTPFWRKSR ASGLPLCNAC GLYSAKNGDA  120
HRPPKLWREG QPVPPGVGDD ARGSPAAVVG AQDGRGAFHS TARAPAPSDP DAASPPGSSC  180
ASPRGPDPRP TAAEEGCSEA GKSASSSLCT QETEVAPRAS ALDGLVAALM GPIPVAAPC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011395490.11e-168GATA-binding factor 1-A
TrEMBLA0A087SA801e-166A0A087SA80_AUXPR; GATA-binding factor 1-A
STRINGA0A087SA801e-167(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41981111