PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011395528.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family E2F/DP
Protein Properties Length: 276aa    MW: 29141 Da    PI: 9.8261
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011395528.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP71.41e-222890168
         E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneir 68
                    r+++sL+llt++fl+ll+++e+g ++ln++++ L    v  ++RRiYDi+NVLe+++l+ek++kn+++
  XP_011395528.1 28 RHDSSLGLLTRRFLSLLNEAEDGSLDLNQASDIL---RV--QKRRIYDITNVLEGVGLLEKQAKNHMS 90
                    6799******************************...88..************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-222690IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.08E-152889IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.2E-282893IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.1E-203089IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440742.46E-683162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MRRSRRVTAS SYKSTSSSGT LPPATTARHD SSLGLLTRRF LSLLNEAEDG SLDLNQASDI  60
LRVQKRRIYD ITNVLEGVGL LEKQAKNHMS AHALNKQRLY VWDRDVMGLP GVAREDRVFV  120
VLAPHGTTLD HSPCQEPGPG EAAPPHRIMV RSKKEPISIV TLPVARQTLQ PGWGLGPAQP  180
PPTSLATPGW PGSSFLMPRT GLALREAHAG SVADAWYRAV AANGAGPTAG DGLPLGSELD  240
PGEGGGLLPG QHSLPGGALA HPQAFLARSS AHEGGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-232289169PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011395528.10.0Transcription factor E2FA
TrEMBLA0A087SAB80.0A0A087SAB8_AUXPR; Transcription factor E2FA
STRINGA0A087SAB80.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP32581314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-20E2F transcription factor 3