PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011395641.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family MYB_related
Protein Properties Length: 230aa    MW: 25709.4 Da    PI: 9.9567
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011395641.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.6e-14107151347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_011395641.1 107 PWTEEEHRLFLMGLAKYGKGDWRSISRNFVITRTPTQVASHAQKY 151
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.7971063IPR017877Myb-like domain
SMARTSM00717151465IPR001005SANT/Myb domain
CDDcd001670.006561758No hitNo description
PROSITE profilePS5129418.835100156IPR017930Myb domain
SuperFamilySSF466893.66E-17101157IPR009057Homeodomain-like
SMARTSM007175.1E-12104154IPR001005SANT/Myb domain
TIGRFAMsTIGR015578.6E-17104154IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.0E-12105150IPR009057Homeodomain-like
CDDcd001671.25E-11107152No hitNo description
PfamPF002497.4E-13107151IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MLGGAGSSTP SGMVEEPWSK EEDKIFEDAL AHVWDRVDRC ERCATQLARR DVQSVRQRLE  60
QLERDVMSVE EGRVLLPNYA VPGESLSVAH LQKKVKSQET ERRKGIPWTE EEHRLFLMGL  120
AKYGKGDWRS ISRNFVITRT PTQVASHAQK YFIRLNSQSR KDKRRASIHD ITSPAPPEPS  180
LLAYGMGHHM AAPGMGMMHV TPGGVAAGVP VMHPGALAHH RAMLQQRMGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011395641.11e-171Transcription factor MYB1R1
SwissprotQ9FNN66e-51SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A087SAM21e-170A0A087SAM2_AUXPR; Transcription factor MYB1R1
STRINGA0A087SAM21e-170(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-53MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]