PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011395646.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family AP2
Protein Properties Length: 247aa    MW: 27377.9 Da    PI: 8.9001
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011395646.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.7e-1158106253
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 
                      ykGV+ + +++r +A+I++      +  ++f+lg fg+a eAa a++  +++l
  XP_011395646.1  58 EYKGVTLHVRTKRHEAHIWEG-----QpgRQFYLGGFGSAAEAALAYDIVALRL 106
                     69******************4.....456*********************9998 PP
2AP2353.5e-11149198154
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 
                     s ++GV+++  +grW+++I         r++ +lg ++t+ +Aa+a+++a+ + +
  XP_011395646.1 149 SFFRGVTRHA-KGRWESRIGQ----AaGRRYLYLGLHDTEVQAARAYDRAAIAQK 198
                     579****998.7******777....2347**********99*********98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-657106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-758113IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-958111IPR016177DNA-binding domain
SMARTSM003801.0E-758120IPR001471AP2/ERF domain
PROSITE profilePS5103210.5258118IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-13149207IPR016177DNA-binding domain
PROSITE profilePS5103214.394150207IPR001471AP2/ERF domain
SMARTSM003801.2E-20150213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-15151207IPR001471AP2/ERF domain
PfamPF008473.6E-7151197IPR001471AP2/ERF domain
PRINTSPR003674.5E-5151162IPR001471AP2/ERF domain
CDDcd000181.03E-19151207No hitNo description
PRINTSPR003674.5E-5189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAYSPRHYCQ PLSTPVTRKR SRESSGEDEA MPSRRSSLHE LMGMSRSAPG TPMEAVPEYK  60
GVTLHVRTKR HEAHIWEGQP GRQFYLGGFG SAAEAALAYD IVALRLGRRE TNYHLSYYEP  120
WLDLLEAQPL EDLVSGLRRQ SKGASQQTSF FRGVTRHAKG RWESRIGQAA GRRYLYLGLH  180
DTEVQAARAY DRAAIAQKGI DAQTNFALCE YLEELGPEAA ARAAARGLLG GTAHLVPLCC  240
AQSPFPC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011395646.10.0Floral homeotic protein APETALA 2
TrEMBLA0A087SAM70.0A0A087SAM7_AUXPR; Floral homeotic protein APETALA 2
STRINGA0A087SAM70.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-30AINTEGUMENTA-like 5