PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011396011.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family AP2
Protein Properties Length: 361aa    MW: 37242.8 Da    PI: 9.6456
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011396011.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-12168219155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV+ ++++gr++A+I++    +   ++++lg +  +e Aa+a++ a++k +g
  XP_011396011.1 168 SQFRGVTKHRRSGRFEAHIWV----KdLGRQVYLGGYECEEHAAEAYDIAALKCKG 219
                     789******************....3334**********************99876 PP
2AP2445.5e-14263312155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s ++GV+ ++ +grW+A+I +p   g +k+++lg f  + eAaka+++a  +l+g
  XP_011396011.1 263 SSFRGVTHHP-SGRWEARIGVP---G-SKHIYLGLFIEEREAAKAYDRALVRLRG 312
                     679****999.7*********8...3.6**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.13E-18168228No hitNo description
SuperFamilySSF541713.14E-11168229IPR016177DNA-binding domain
PfamPF008479.8E-8169219IPR001471AP2/ERF domain
PROSITE profilePS5103216.002169228IPR001471AP2/ERF domain
SMARTSM003804.9E-23169234IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-14169228IPR001471AP2/ERF domain
CDDcd000181.05E-17263320No hitNo description
SuperFamilySSF541717.85E-14263320IPR016177DNA-binding domain
PROSITE profilePS5103216.067264320IPR001471AP2/ERF domain
PfamPF008479.9E-6264312IPR001471AP2/ERF domain
SMARTSM003807.8E-22264326IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-16264320IPR001471AP2/ERF domain
PRINTSPR003671.0E-5265276IPR001471AP2/ERF domain
PRINTSPR003671.0E-5302322IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGVDLGPSEG PGHLGNSQGL EGLLGLGGLN PLAGTSVDNP LASYTEGGDF DPRAHAGARH  60
VLEGMVEIGH GGNASARARD ANDYASPAPA ASHGYESLGL VGAHFPGTPP RVAGLAAPKP  120
SPSSVVAAAR RPARGAGAAG AGIGPDGPPL GPGARKAGAA GDKAARSSQF RGVTKHRRSG  180
RFEAHIWVKD LGRQVYLGGY ECEEHAAEAY DIAALKCKGR RGCKTNFDLT KYADLLGCIN  240
RMTMEELVMA VRRQSQGFSR GTSSFRGVTH HPSGRWEARI GVPGSKHIYL GLFIEEREAA  300
KAYDRALVRL RGRGAATNFA LGGSSENIGG GMLLPAPAGS ESKTPMPCPS YSHATASSGQ  360
H
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396011.10.0AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A087SBN70.0A0A087SBN7_AUXPR; AP2-like ethylene-responsive transcription factor PLT2
STRINGA0A087SBN70.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.16e-42AP2 family protein