PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011396723.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family Nin-like
Protein Properties Length: 261aa    MW: 27454.7 Da    PI: 8.7982
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011396723.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK69.93.5e-223584352
          RWP-RK  3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                    ++i+led++++F+lp  +A+++Lg++lTvLKr CR+ G++RWP+R++ksl
  XP_011396723.1 35 SSITLEDVAAHFHLPADKACQQLGISLTVLKRVCRRVGVDRWPYRRVKSL 84
                    579*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.58718104IPR003035RWP-RK domain
PfamPF020421.1E-203684IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MLESTPATNL HGSDSGPSRT RSTRRKLSKH GVLASSITLE DVAAHFHLPA DKACQQLGIS  60
LTVLKRVCRR VGVDRWPYRR VKSLERIFHS LNDAPGSGAA RDAHLATWSS EESALGTVVL  120
HAGAPGSPRR ALLHGGAALD LGCASPDTSG REDGGCEAPT PRRSSDESMA ALLRAALPEV  180
LERGAAAGPA PRERRKGTDG FASGSTSDAS ARPEARPDGD AWAQGPSQPD AAAVRQQLES  240
LARQLGHTLC DVQLQPHAAR P
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396723.10.0Protein RKD3
TrEMBLA0A087SDP10.0A0A087SDP1_AUXPR; Protein RKD3
STRINGA0A087SDP10.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP841650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.12e-11RWP-RK domain-containing protein