PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011396857.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family E2F/DP
Protein Properties Length: 430aa    MW: 44906.8 Da    PI: 4.4232
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011396857.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP35.91.3e-11148211670
         E2F_TDP   6 Lrlltqkflkllek...see.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                     L+ll+++f + + +     e +++ ln+va +L   dv   rRR+YD++NV+e+++++ +  k  ++  
  XP_011396857.1 148 LTLLCERFQRKYGRlgpGGEpRVLLLNDVAASL---DV--PRRRLYDVINVFESIEVMRRVGKLTYEFA 211
                     6667777666666555534458999********...**..********************999888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013722.4E-8143212IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.5E-13146213IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.62E-7147213IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.1E-10148212IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-5237269IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEEDAAAVTP PSAPTPALPE ESEPGPFAAE ASLPPQEEVH ALAIPGADLA ASPTPEATPA  60
EDGEAGATRG QRRKRESIPP PEDTPPSLDG ARPLTSDGYE DEEEEGEKVV ASRGRRRNSA  120
AARGEGAAPT PPSGGWSAAA AAPPKSELTL LCERFQRKYG RLGPGGEPRV LLLNDVAASL  180
DVPRRRLYDV INVFESIEVM RRVGKLTYEF AGFQHLPALL AQLLDEEMKG LPTQITVERR  240
LYDISSILCS VGLIQRVYVK KRQPAFEWVY GWRPGDLHAP PPLLPFLGQE GEEGGGGGGG  300
DPGLPAPALG GEALAAPALT IPMPPLSFPG LAGLLPPGLA MPGRAPGEEA GAGGGDAEST  360
AAMQARIMRS QFLQLQQLSE MVSAAPRVPG NPVDEFPGFL PGGMLPTVPP LMVPPPPAVA  420
GQAPSKQGEE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396857.10.0Transcription factor E2F7
TrEMBLA0A087SE250.0A0A087SE25_AUXPR; Transcription factor E2F7
STRINGA0A087SE250.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41861012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.13e-11DP-E2F-like 1