PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011396941.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family bHLH
Protein Properties Length: 161aa    MW: 17434.8 Da    PI: 8.7803
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011396941.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08755454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    a+  rE+ RR+r+N++feeL +l  +   +++ K + +++   A++ + +L
  XP_011396941.1  7 AKATREKARRERLNECFEELARLCDPT--GRGVKTDRVSVIADAIRVLTQL 55
                    6788*******************9886..6***************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.293355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-6659No hitNo description
SuperFamilySSF474597.72E-12673IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6755IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-9877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-7961IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MSTAAVAKAT REKARRERLN ECFEELARLC DPTGRGVKTD RVSVIADAIR VLTQLRVENN  60
QLRQLNKFLE ERVSNLERAR AQNVYQQSLL QQRADSLLQQ HAGAGMHTGV LAAGPGRIAE  120
ALGGLTGVEL TARLEDDAGA GLAWLPAPNA SEDSKLRPPA A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396941.11e-113Transcription factor
TrEMBLA0A087SEA61e-111A0A087SEA6_AUXPR; Transcription factor
STRINGA0A087SEA61e-112(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP564977
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.12e-11bHLH family protein