PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011396995.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family WRKY
Protein Properties Length: 256aa    MW: 28383.8 Da    PI: 8.5461
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011396995.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.74.7e-234587244
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSS CS
            WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaed 44
                    +DgynWrKYG K+vkgs +prsYY+C+++gC+vkk +er+ + 
  XP_011396995.1 45 EDGYNWRKYGEKHVKGSSCPRSYYKCSFPGCQVKKIIERNLKT 87
                    7**************************************9854 PP
2WRKY73.82.1e-23214253140
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkver 40 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k++++
  XP_011396995.1 214 LDDGYRWRKYGQKMVKGNPHPRSYYKCTHPGCCVRKQLDC 253
                     59***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-193885IPR003657WRKY domain
PROSITE profilePS5081119.45139104IPR003657WRKY domain
SuperFamilySSF1182903.53E-194089IPR003657WRKY domain
SMARTSM007747.3E-194495IPR003657WRKY domain
PfamPF031063.5E-174584IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-22203252IPR003657WRKY domain
PROSITE profilePS5081122.871209252IPR003657WRKY domain
SuperFamilySSF1182903.14E-20209253IPR003657WRKY domain
SMARTSM007742.9E-16214255IPR003657WRKY domain
PfamPF031063.6E-17215252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEAHRDSPPL ELAGTMPWAF PYNYTFNAPS RNRQDRPRRE STANEDGYNW RKYGEKHVKG  60
SSCPRSYYKC SFPGCQVKKI IERNLKTGFV SVCLSKPPDR HPGRRAVGRG GRGLRRRLVG  120
LPLAPGLHTH GCGGGAGDPA SLDPPHGMRA GAHEDAAVDG ATSSDDLADD SALEDEVGSD  180
DSAASLGRLW ESPPRRFRCE TPLVVELETD ADNLDDGYRW RKYGQKMVKG NPHPRSYYKC  240
THPGCCVRKQ LDCMLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-18205252855Probable WRKY transcription factor 4
2lex_A2e-18205252855Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396995.10.0putative WRKY transcription factor 4
TrEMBLA0A087SEF50.0A0A087SEF5_AUXPR; Putative WRKY transcription factor 4
STRINGA0A087SEF50.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4691626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.21e-36WRKY DNA-binding protein 26