PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011397002.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family Whirly
Protein Properties Length: 248aa    MW: 26840.2 Da    PI: 9.3383
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011397002.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly113.61.5e-35742092138
          Whirly   2 vyktkaalkvkavrptfealdsgn.lklkraGglllelanataerkydWekkqsfalsatevaelvd.laskesceffhdpaakgsneGkvrkal 94 
                     vyk+kaa++vk ++pt++   +g+ ++++r+G+ll+e+ana +er ydWekk++falsa e a +++ + + + ++ffhdp + ++neG++ k+l
  XP_011397002.1  74 VYKSKAAFSVKVIKPTWGRTGTGSgITVTRDGTLLFEFANARGERDYDWEKKENFALSAVECAGILEsVEAGKEASFFHDPNKMSANEGQIVKTL 168
                     9****************99977653789*********************************998777799************************* PP

          Whirly  95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                     ++ P  + s +f++lsv+n+    + +f +P+s ae  v+rs++
  XP_011397002.1 169 RLSPGQNNS-YFMSLSVKNQ--GQQARFDLPLSSAELRVVRSII 209
                     ****98876.9********9..67889*************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.104.2E-4965223IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.51E-2967223IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.0E-3974208IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MISSALAAAR SSAGTRFRHA FQTTCQASGF RQAGAAAYQS AAYSPPSGSR PFVSRPTNDA  60
PDPRKVIIFT NYTVYKSKAA FSVKVIKPTW GRTGTGSGIT VTRDGTLLFE FANARGERDY  120
DWEKKENFAL SAVECAGILE SVEAGKEASF FHDPNKMSAN EGQIVKTLRL SPGQNNSYFM  180
SLSVKNQGQQ ARFDLPLSSA ELRVVRSIID FMIPYMLGFN ELVLGPPDIQ DGSSGGQFNT  240
PGGPEPPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A2e-326822611170StWhy2
3n1i_A2e-326822611170protein StWhy2
3n1j_A2e-326822611170Protein StWhy2
3n1k_A2e-326822611170protein StWhy2
3n1l_A2e-326822611170protein StWhy2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011397002.10.0hypothetical protein F751_1381
TrEMBLA0A087SEG20.0A0A087SEG2_AUXPR; Uncharacterized protein
STRINGA0A087SEG20.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20261516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.17e-33WHIRLY 2