PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

XP_011397394.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella

Family

Protein Properties

Length: 210aa MW: 23239.4 Da PI: 6.7926

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011397394.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	120.7	6.4e-38	50	138	13	95
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllsk......acelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 + fkn++lPlarikki+k+dedv+misaeaPvl++k ace+f+lelt r+w aeenkrrtl+++d+a a+++ d+fdfl+di XP_011397394.1 50 PAHFKNQTLPLARIKKIMKSDEDVRMISAEAPVLFAKasgctaACEFFVLELTQRAWQAAEENKRRTLQRNDVAMAIQHIDVFDFLLDI 138 468*******************************95444445******************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.11E-26	33	135	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.7E-33	52	127	IPR009072	Histone-fold
Pfam	PF00808	2.9E-19	57	126	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MAAPDQQAPN SFGSFPNQPG PRTFTYYPNE SLRRLWQEAK DEIAMTEPDP AHFKNQTLPL 60 ARIKKIMKSD EDVRMISAEA PVLFAKASGC TAACEFFVLE LTQRAWQAAE ENKRRTLQRN 120 DVAMAIQHID VFDFLLDIAG PGGYGTSPRF LQTQGMQYPQ YHPSMGPPPQ AGMYGSGGGQ 180 QQFVAPYHQP MAPVPPPSLT LSHPLLHASP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-37	53	139	13	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	119	RRTLQRN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011397394.1	1e-156	Nuclear transcription factor Y subunit C-2
Swissprot	Q8LCG7	3e-38	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A087SFK2	1e-154	A0A087SFK2_AUXPR; Nuclear transcription factor Y subunit C-2
STRING	A0A087SFK2	1e-155	(Auxenochlorella protothecoides)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2195	16	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	1e-40	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Entrez Gene	23614615

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]