PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011397494.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family MYB_related
Protein Properties Length: 229aa    MW: 23572.7 Da    PI: 10.0006
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011397494.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.1e-124185347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +W++ E+  ++ + +qlG+g+Wk I+      Rt+ q+ s+ qk+
   XP_011397494.1 41 PWSETEHAAFLAGLRQLGKGQWKHISLLYVPSRTPTQVASHAQKH 85
                     8*************************99988************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8013490IPR017930Myb domain
SuperFamilySSF466898.97E-143789IPR009057Homeodomain-like
SMARTSM007172.4E-83888IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-93885IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-133888IPR006447Myb domain, plants
PfamPF002495.9E-94185IPR001005SANT/Myb domain
CDDcd001671.28E-84186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MCASPLAGFE LPPRLTLNEE LARSEKQRYG GGRKECRKGE PWSETEHAAF LAGLRQLGKG  60
QWKHISLLYV PSRTPTQVAS HAQKHFLRAA GATKRRSRFT AVEAAVTHQQ ALGARSPPGD  120
ATAGHATALS PPTGAEAARC SPAAQPSGDA SVPLGALHPT ALLPQPGAVA EGKPFFPLGP  180
HGIPILPTTP GRIKGSASGC ATDTGSLAAL AGVAAALSQD SDSFSGVWP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011397494.11e-162Transcription factor MYB1R1
TrEMBLA0A087SFV21e-161A0A087SFV2_AUXPR; Transcription factor MYB1R1
STRINGA0A087SFV21e-162(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-21MYB_related family protein