PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011397841.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family C3H
Protein Properties Length: 97aa    MW: 11076 Da    PI: 8.4954
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011397841.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.22.7e-132549227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    kt+lC ++++ G C++G+rC+FaHg+
  XP_011397841.1 25 KTRLCTRWLE-GNCRFGNRCNFAHGE 49
                    9*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-152253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.5492350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-92353IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-72349IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-102549IPR000571Zinc finger, CCCH-type
PROSITE profilePS500208.655992IPR001202WW domain
SuperFamilySSF510454.15E-56994IPR001202WW domain
Gene3DG3DSA:2.20.70.105.1E-56992No hitNo description
CDDcd002010.001267090No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MYRADRGSYD DSGRKGFRGT EENSKTRLCT RWLEGNCRFG NRCNFAHGEA ELRGLPPRSR  60
GPSGGPYSQT PDGEHYFHHR ERNETQWDPP AGWTGTT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011397841.11e-66Zinc finger CCCH domain-containing protein 36
TrEMBLA0A087SGU93e-65A0A087SGU9_AUXPR; Zinc finger CCCH domain-containing protein 36
STRINGA0A087SGU95e-66(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP569077
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-09C3H family protein