PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011398034.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family CPP
Protein Properties Length: 237aa    MW: 24488.9 Da    PI: 8.0658
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011398034.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR482.5e-15106144442
             TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     ++CnCkkskClk+YC+Cfa + +C+  C+C +C N+e++
  XP_011398034.1 106 RKCNCKKSKCLKLYCDCFAGNGFCGPACTCVSCANREDN 144
                     79*********************************9975 PP
2TCR42.41.4e-13177208132
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCk 32 
                     ++++gCnCkks C+kkYCeCf+ag  C+e+Ck
  XP_011398034.1 177 QHRRGCNCKKSGCIKKYCECFQAGIACGEHCK 208
                     5899*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-11103144IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163427.582104217IPR005172CRC domain
PfamPF036385.9E-12106142IPR005172CRC domain
SMARTSM011143.6E-9177211IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.1E-10180208IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MALPQSPACV SLARGGRGTA GPALLPITQL RREGSGAEAA AVASLSRHLS APAPPTERQS  60
RLLDSPAAAS GRSQGDRCSP DGTADGASEG MGEALSSLFP FPTGARKCNC KKSKCLKLYC  120
DCFAGNGFCG PACTCVSCAN REDNRGAVQQ QREAILIRNP NAFDQKIAAV DVESGVQHRR  180
GCNCKKSGCI KKYCECFQAG IACGEHCKDG SVAALAADTH LLLDTPLGPE GLLPAPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1810820814114Protein lin-54 homolog
5fd3_B2e-1810820814114Protein lin-54 homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011398034.11e-170Lin-54-like protein
TrEMBLA0A087SHD91e-169A0A087SHD9_AUXPR; Lin-54-like protein
STRINGA0A087SHD91e-170(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.15e-22Tesmin/TSO1-like CXC domain-containing protein