PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011398188.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family MYB
Protein Properties Length: 229aa    MW: 24585.5 Da    PI: 8.1223
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011398188.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-1033661447
                     HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++v+ +G+ +W++Ia+ +g gR +k+c++rw++ 
   XP_011398188.1 33 ELVETYGPQNWSLIAKSLGSGRNGKSCRLRWFNQ 66
                     68*****************************996 PP
2Myb_DNA-binding44.92.6e-1473117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + ++T+eE+e ++  + +lG++ W++Ia++++ gRt++ +k++w+ +
   XP_011398188.1  73 KEAFTQEEEEEILLRHGELGNR-WAAIAKYLP-GRTDNAIKNYWNGH 117
                      578*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.0342267IPR017930Myb domain
SMARTSM007173.7E-52669IPR001005SANT/Myb domain
SuperFamilySSF466891.56E-2327114IPR009057Homeodomain-like
CDDcd001672.84E-83065No hitNo description
Gene3DG3DSA:1.10.10.604.7E-193374IPR009057Homeodomain-like
PfamPF002491.5E-93366IPR001005SANT/Myb domain
PROSITE profilePS5129423.72368122IPR017930Myb domain
SMARTSM007179.5E-1572120IPR001005SANT/Myb domain
PfamPF002495.2E-1373117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2275122IPR009057Homeodomain-like
CDDcd001678.34E-887118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGHWGVKGTA CPAESDGEEM QLDGSRRTCW SPELVETYGP QNWSLIAKSL GSGRNGKSCR  60
LRWFNQLDPN LKKEAFTQEE EEEILLRHGE LGNRWAAIAK YLPGRTDNAI KNYWNGHLKK  120
RLGPSRSADE ADAKRLRSLA SLALDTGHRP GGGAASMHGG GGQAPAALQS SLGDVLRARL  180
SGLAPRGQRL TPGMAGHGVP GGAQEHHEGR SEDNPLSFLA MAASMDAVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-293312217105MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-303312217105C-Myb DNA-Binding Domain
1msf_C8e-303312217105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011398188.11e-167Transcription factor LAF1
TrEMBLA0A087SHU21e-165A0A087SHU2_AUXPR; Transcription factor LAF1
STRINGA0A087SHU21e-166(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.17e-31myb domain protein 70