PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011398527.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family CPP
Protein Properties Length: 386aa    MW: 39363.4 Da    PI: 8.8515
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011398527.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.51.3e-133675242
             TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                    +k++CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N++++
  XP_011398527.1 36 SKRHCNCKNSRCLKLYCECFASGRYCDG-CNCVGCCNNQQN 75
                    689*************************.********9985 PP
2TCR51.22.5e-16113152140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     +++kgCnCkks ClkkYCeCf+ag +Cse+CkC dCkN +
  XP_011398527.1 113 RHNKGCNCKKSGCLKKYCECFQAGIFCSENCKCCDCKNYD 152
                     589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-123575IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.836153IPR005172CRC domain
PfamPF036384.6E-103872IPR005172CRC domain
SMARTSM011143.6E-18113154IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.7E-12116151IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MQQASASAAA AAAAAMASPS RRPGGRPRNP PTAANSKRHC NCKNSRCLKL YCECFASGRY  60
CDGCNCVGCC NNQQNEGVRQ SAVEAILDRN PNAFRPKIAG DVTEEGASLG AARHNKGCNC  120
KKSGCLKKYC ECFQAGIFCS ENCKCCDCKN YDGSEARAAA ISPGLPAHLQ TALATPPHPV  180
GAGPGSADAA HSLGAGSGSR GEAGSGAFVP GGYGSPGAEV RRPDAAGRAP AVAFPPPPYG  240
HPYGAGMDPA LALASPHPAM VARVVGDKAA RKHRELVANN VLAAAVSAQA AAAPGPGTQQ  300
HLRGAHVPGP LGLAPRGTGF RNPGGAMLSH ASSQQQQLQQ PAPPQPHQQQ LMFMAAAAQQ  360
QAASMLQPAQ YPPPLGQQPQ QHAASP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-29261619131Protein lin-54 homolog
5fd3_B6e-29261619131Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00269DAPTransfer from AT2G20110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011398527.10.0Lin-54-like protein
TrEMBLA0A087SIS70.0A0A087SIS7_AUXPR; Lin-54-like protein
STRINGA0A087SIS70.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.12e-47Tesmin/TSO1-like CXC domain-containing protein