PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011398674.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family NF-YC
Protein Properties Length: 140aa    MW: 14427.5 Da    PI: 4.8101
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011398674.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC47.73.4e-15391191898
           NF-YC  18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                     +  l l r+k ++k d dvk +s+ea   ++ka el++  +t r+     ++ r+ l   d+a+av++ +  dfl d++p+
  XP_011398674.1  39 QLILTLGRVKTLIKEDADVKFVSSEAYFAIAKATELLLEAMTERAAQPMLQSGRSQLGYGDVAQAVSSWQSLDFLGDVIPH 119
                     4568899************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.85E-1635121IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.9E-1943118IPR009072Histone-fold
PfamPF008088.6E-944104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MEAPSSAPAA EPQFLASGTG TEPAQPSATG DGPSTSKAQL ILTLGRVKTL IKEDADVKFV  60
SSEAYFAIAK ATELLLEAMT ERAAQPMLQS GRSQLGYGDV AQAVSSWQSL DFLGDVIPHK  120
IPAGVVLQKM LAAKAAAAVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011398674.12e-95Nuclear transcription factor Y subunit C-2
TrEMBLA0A087SJ745e-94A0A087SJ74_AUXPR; Nuclear transcription factor Y subunit C-2
STRINGA0A087SJ749e-95(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1085933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-12nuclear factor Y, subunit C2