PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011399305.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family G2-like
Protein Properties Length: 198aa    MW: 20332.8 Da    PI: 6.0028
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011399305.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.35.4e-3193147155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k rlrWtp LH++F +av+qLGG+ekAtPk il+lm v gLt++h+kSHLQkYRl
  XP_011399305.1  93 KSRLRWTPSLHASFARAVSQLGGPEKATPKGILKLMRVSGLTIYHIKSHLQKYRL 147
                     68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.62790150IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2991149IPR009057Homeodomain-like
SuperFamilySSF466898.42E-1792150IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-2393147IPR006447Myb domain, plants
PfamPF002494.4E-895146IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MKGPDRDLLL NSLLEPSWAQ ASTSATGTGW TGGLGPGPGS SAPGVAAALH PYGVYLHPLA  60
LPIGGSPASS TAPGMSDGPD NFKFEDSGPS NSKSRLRWTP SLHASFARAV SQLGGPEKAT  120
PKGILKLMRV SGLTIYHIKS HLQKYRLSIK LPGEGGDGED EAEGEQQRLG LAGDSEDDCG  180
RPLEPAALDP ALALASAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-2493146154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-2493146154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-2493146154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-2493146154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011399305.11e-139Myb family transcription factor APL
TrEMBLA0A087SL051e-137A0A087SL05_AUXPR; Myb family transcription factor APL
STRINGA0A087SL051e-138(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1111645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.26e-26G2-like family protein