PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011399536.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family C3H
Protein Properties Length: 96aa    MW: 10364.4 Da    PI: 6.5006
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011399536.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-078096420
                    ---SGGGGTS--TTTTT CS
         zf-CCCH  4 elCrffartGtCkyGdr 20
                     +C ff+rtGtC yG+r
  XP_011399536.1 80 QPCVFFLRTGTCAYGAR 96
                    69*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.8177696IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MNVPGSPSPF MGSGSMAYSL APSASPHSVL SLPHRPMGSY PTWSESEWGP SRDPSQAQAQ  60
HSISSRLSHE EDPKEEGQQQ PCVFFLRTGT CAYGAR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011399536.11e-64hypothetical protein F751_2185
TrEMBLA0A087SLJ42e-63A0A087SLJ4_AUXPR; Uncharacterized protein
TrEMBLA0A1D1ZSL77e-59A0A1D1ZSL7_AUXPR; Uncharacterized protein
TrEMBLA0A3M7L2605e-60A0A3M7L260_AUXPR; Uncharacterized protein
STRINGA0A087SLJ44e-64(Auxenochlorella protothecoides)