PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011400550.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family AP2
Protein Properties Length: 305aa    MW: 32414.3 Da    PI: 6.8327
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011400550.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.22.1e-132782155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                    s y GV+++k++gr++A+I+ +  +g k  + +lg++++ae Aa+ +++a++ l+g
  XP_011400550.1 27 SPYLGVTQYKRTGRFEAHIWIFEARGaKGHQRHLGSYDSAEAAARCYDRAALHLRG 82
                    6799*****************86699999999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-132791IPR016177DNA-binding domain
PROSITE profilePS5103215.2372890IPR001471AP2/ERF domain
SMARTSM003804.8E-232896IPR001471AP2/ERF domain
PfamPF008472.8E-62982IPR001471AP2/ERF domain
CDDcd000181.17E-142990No hitNo description
Gene3DG3DSA:3.30.730.101.7E-142991IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MPGAYHPGGT HGFPHKRKRS GPKSKSSPYL GVTQYKRTGR FEAHIWIFEA RGAKGHQRHL  60
GSYDSAEAAA RCYDRAALHL RGPSAELNFP LREYEEDPFM LAHSKADRAR FLDLLRADAH  120
QQMLSLLALG PDGLFDASPG RPLSVEPLAP RPLRGHGWEA SALNSRAASP CHSAAAPSSD  180
LYACHAEASS QLRLQDAYGE EAYAHAGEVG GWAAQAHPAA AACDPWHARA VGLRAAAAPR  240
LSPMAAVAEE LRALQHLACP ATDAAAILPS TVDLAWSAAD AEEVGSPLIM LDDGGVGAGW  300
DLGVY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011400550.10.0AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A087SPB30.0A0A087SPB3_AUXPR; AP2-like ethylene-responsive transcription factor AIL1
STRINGA0A087SPB30.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP575168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.18e-11AP2 family protein