PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011400581.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family bHLH
Protein Properties Length: 282aa    MW: 29025 Da    PI: 7.0418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011400581.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-10139184555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++E rRR+riN+++e Lre++P++     ++ + a+ Le + +Y++ +q
  XP_011400581.1 139 HQQAEARRRSRINDRLEALREVVPHS-----ERANTATFLEDVLKYVRAMQ 184
                     899**********************9.....8***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.627134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12137194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-11137199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.05E-8137185No hitNo description
PfamPF000106.7E-8138184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-4140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDYPPRNPGE AGDPGQAQPD SGQGGMNPAT LQALLAASAR SSAFGPVGGQ LPHPPPFPTE  60
PGPGQQLGPS SMHLFNQLLG QPGLAHLAGY PDSGPPSGPG PAPGNAPPSP TSGGDGGGGK  120
KQRTRAGPSP SSSSYASRHQ QAEARRRSRI NDRLEALREV VPHSERANTA TFLEDVLKYV  180
RAMQRRMAEL EAQQPHAWPP GMQAAAAQQQ QRGMGHMEQD PGAMFGAQAG QPAAQLAQAQ  240
AAHAAFAAHA QAQQAAASGL AGSNEEEERA KQAQEVGAQA PL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011400581.10.0Transcription factor BIM2
TrEMBLA0A087SPE40.0A0A087SPE4_AUXPR; Transcription factor BIM2
STRINGA0A087SPE40.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP566588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-11BES1-interacting Myc-like protein 2