PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011400749.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family MYB_related
Protein Properties Length: 286aa    MW: 30823.8 Da    PI: 9.8995
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011400749.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-09191232245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       rW +e+ el+++a  q+G++ +++I++ ++ gR + ++k+++ 
   XP_011400749.1 191 ERWGAEDTELFYKALSQFGTD-FTLISHLFP-GRQRPHLKNKFK 232
                      59*******************.*********.*********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.3E-25183260No hitNo description
SuperFamilySSF466897.8E-9184236IPR009057Homeodomain-like
SMARTSM007170.0012189237IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-4191232IPR009057Homeodomain-like
CDDcd001676.68E-4192233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MNFDLSTLDR LVTEKKSSES KSTKFVPRAG VRAVSDQALQ SPQIAAATPV AGSPDPSPAH  60
LALALRSHVQ ALAGEELTAE KARTMSLRAV VAWGNIAAAT PVAGSPDPSP AHLALALRSH  120
VQALAGEELT AEKARTMSLR AVVAVGADGR IVIAEASLTV QAQERVENRR VVTDEHFRLN  180
SYTYANRLHN ERWGAEDTEL FYKALSQFGT DFTLISHLFP GRQRPHLKNK FKRESKVNPR  240
RVDAALKASA SATATSYQPL SSPEQAALSP GEQHTSILEP VDPQKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5n9g_C4e-1614324727136Transcription factor TFIIIB component B'' homolog
5n9g_H4e-1614324727136Transcription factor TFIIIB component B'' homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011400749.10.0Transcription factor TFIIIB component B''
TrEMBLA0A087SPV80.0A0A087SPV8_AUXPR; Transcription factor TFIIIB component B
STRINGA0A087SPV80.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP377099
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.18e-15MYB_related family protein