PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011400946.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family SBP
Protein Properties Length: 150aa    MW: 16749.3 Da    PI: 8.3319
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011400946.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP58.32e-183443677
                    TTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP 36 sgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                    +g++ rfCqqC+r+  l++fD++krsCr rL++hn+rrrk+ 
  XP_011400946.1  3 NGVRSRFCQQCGRYQPLEDFDDTKRSCRVRLQRHNQRRRKRP 44
                    7899***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114117.212143IPR004333Transcription factor, SBP-box
PfamPF031101.1E-14242IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.2E-10330IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.36E-15345IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MRNGVRSRFC QQCGRYQPLE DFDDTKRSCR VRLQRHNQRR RKRPNEEEDG LRPLVPGAPL  60
GQRDVQVMQE ALQLASNALL QARPVMLLLL KGYAGMFNYA LEDASLRPLP DPCTAADGAL  120
DPGTMAAFMP LPGGAMGEGI HPSLEQQMLF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011400946.11e-106Squamosa promoter-binding-like protein 9
TrEMBLA0A087SQD51e-104A0A087SQD5_AUXPR; Squamosa promoter-binding-like protein 9
TrEMBLA0A3M7KR211e-103A0A3M7KR21_AUXPR; Uncharacterized protein
STRINGA0A087SQD51e-105(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-07SBP family protein