PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011401194.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family MYB
Protein Properties Length: 175aa    MW: 19421.1 Da    PI: 11.6217
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011401194.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33e-1214491248
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     l ++v+ +G g W+tIar +  gRt+kqc++rw ++l
   XP_011401194.1 14 LRRLVQAHGEGPWSTIARAFE-GRTGKQCRERWANHL 49
                     6789*****************.***********9996 PP
2Myb_DNA-binding55.91e-175597145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     rg+W +eE++++vd+++  G++ W+ Ia++++ gRt++ +k++w+
   XP_011401194.1 55 RGAWREEEELRFVDCHRTVGNR-WADIAKRIP-GRTENAVKNHWN 97
                     89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.583149IPR017930Myb domain
SuperFamilySSF466892.79E-241396IPR009057Homeodomain-like
CDDcd001671.52E-101449No hitNo description
SMARTSM007178.8E-41451IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-201455IPR009057Homeodomain-like
PfamPF002498.6E-101449IPR001005SANT/Myb domain
PROSITE profilePS5129424.33450104IPR017930Myb domain
SMARTSM007171.6E-1454102IPR001005SANT/Myb domain
PfamPF002491.2E-155597IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-1956103IPR009057Homeodomain-like
CDDcd001677.26E-1257100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MPSHHPTLNA SLPLRRLVQA HGEGPWSTIA RAFEGRTGKQ CRERWANHLR PNIRRGAWRE  60
EEELRFVDCH RTVGNRWADI AKRIPGRTEN AVKNHWNATL RRKPCSAPGG RDTLLKRYMG  120
CTTGQSIGSL PQDGADDSFL TPTVSLLLPA GLLSPTERGR LGPGPLSPPS RPSRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-331610317104C-Myb DNA-Binding Domain
1msf_C4e-331610317104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011401194.11e-125Transcription factor MYB98
TrEMBLA0A087SR271e-123A0A087SR27_AUXPR; Transcription factor MYB98
STRINGA0A087SR271e-124(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.18e-39myb domain protein 118