PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011401306.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family SBP
Protein Properties Length: 207aa    MW: 22042.2 Da    PI: 10.6791
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011401306.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP82.55.5e-261892276
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
                    Cq++gC+++ls++  y++r +vC+ h k+p+   +g+e r+Cq+C+  h ls++D ++rsCrr+L++hn+rrr+ 
  XP_011401306.1 18 CQADGCSVNLSKLPFYYQRNHVCTEHNKCPSFRRQGEEVRYCQRCGVAHPLSDYDGDRRSCRRQLERHNARRRRL 92
                    *************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114122.5121592IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.5E-191779IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.14E-241794IPR004333Transcription factor, SBP-box
PfamPF031106.2E-251891IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGRGSRGPRP RLFAKGKCQA DGCSVNLSKL PFYYQRNHVC TEHNKCPSFR RQGEEVRYCQ  60
RCGVAHPLSD YDGDRRSCRR QLERHNARRR RLALAAAATP RSRSPAGERW VAPSEPGPLP  120
LAPVVAPSAS YAVPALSPAA SAAAAGPVDE RVCRGDDPFA GPAAAWLAAA TTPPPAALGP  180
LRPSRRPTGP PPPACLLMVP LAAVSVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-141791579squamosa promoter binding protein-like 7
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011401306.11e-144Squamosa promoter-binding-like protein 11
TrEMBLA0A087SRD81e-143A0A087SRD8_AUXPR; Squamosa promoter-binding-like protein 11
STRINGA0A087SRD81e-144(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27360.47e-16squamosa promoter-like 11