PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011401318.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family E2F/DP
Protein Properties Length: 400aa    MW: 42259.6 Da    PI: 4.7745
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011401318.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP629e-2052116171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     rk ksL ll+++f++ +   + ++++l+  a++L    v  +rRRiYDi+NVLe+++++ek +kn++ w+g
  XP_011401318.1  52 RKAKSLSLLCENFISRFG-IPGTVISLDGSARSL---GV--ERRRIYDIVNVLESVKVVEKVQKNQYAWHG 116
                     799*************99.5889***********...**..****************************98 PP
2E2F_TDP62.46.8e-20152232171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                     rkeks++ l+q+f++++  s+++ + l+e+a++L+       ++k+k+RR+YDi+N+L+al+liek     k ++ ++w g
  XP_011401318.1 152 RKEKSMTRLSQRFVQMFMLSKTKSLGLDEAARALLGGsedagHFKTKVRRLYDIANILSALHLIEKahvgeKGRPGFQWLG 232
                     79********************************987889**************************999999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.7E-2448118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.1E-2152116IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-1853116IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.17E-1255117IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.5E-20150234IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.3E-25152232IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.9E-17153232IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.77E-9154233IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEEAPQLQEP GPAQGPPLKG PKMKKALRAS IEGGGSPAPA APRPERPEGY SRKAKSLSLL  60
CENFISRFGI PGTVISLDGS ARSLGVERRR IYDIVNVLES VKVVEKVQKN QYAWHGLERL  120
ATSLAELRAQ AEAELAEVGA GGDDSLTGLD ERKEKSMTRL SQRFVQMFML SKTKSLGLDE  180
AARALLGGSE DAGHFKTKVR RLYDIANILS ALHLIEKAHV GEKGRPGFQW LGPEAGLGLP  240
FAALAAGVEG AQPQLTEEQA AVVAGAQAGG EEMPYMDAAT AAAGNNSLQY LHAWYYTNYC  300
YSNGLYNNNW VGKPAGEEGL PPGGLVEGMQ VVGEELAPQQ LPDGGPGVGA GEGEQAPGAI  360
AQLPGDATHA LAQIQQTVTA QAEGLPEEPQ GQQPLQEDGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-36512253230Transcription factor E2F8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011401318.10.0Transcription factor E2F7
TrEMBLA0A087SRF00.0A0A087SRF0_AUXPR; Transcription factor E2F7
STRINGA0A087SRF00.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41861012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.16e-41DP-E2F-like protein 3