PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011401432.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family C3H
Protein Properties Length: 127aa    MW: 14144.1 Da    PI: 9.5899
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011401432.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.8e-06830427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                      C f+ + GtC+ G+ C+F H++
  XP_011401432.1  8 QDCIFYIQ-GTCNKGALCPFRHDQ 30
                    68**9999.***********9986 PP
2zf-CCCH19.12.2e-064365427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                      C ff++ G+C+ G+ C+F H++
  XP_011401432.1 43 QDCIFFLQ-GWCSKGSLCPFRHDQ 65
                    58******.***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.399431IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4430IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6529IPR000571Zinc finger, CCCH-type
SMARTSM003560.293965IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4463966IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-64164IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-44365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MLDSRKNQDC IFYIQGTCNK GALCPFRHDQ SKVQQHRAQQ AQQDCIFFLQ GWCSKGSLCP  60
FRHDQACRGV GGGVSAGSYT TMHSVVMAPK SRAGHASHSS VRPLAADRPS QCHNFHPSIP  120
CRQRLMR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011401432.11e-90hypothetical protein F751_5330
TrEMBLA0A087SRR33e-89A0A087SRR3_AUXPR; Uncharacterized protein
STRINGA0A087SRR34e-90(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP578177