PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011401669.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family SBP
Protein Properties Length: 89aa    MW: 9993.11 Da    PI: 11.7476
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011401669.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP56.95.5e-185503277
                    -EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP 32 vvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                    +v  +g+  rfCqqC+rf els fD e+rsCr+rL +h  rrr+++
  XP_011401669.1  5 SVPFRGVDSRFCQQCGRFQELSAFDGEHRSCRERLLRHAGRRRRQS 50
                    5778999************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114116.016149IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.3E-11236IPR004333Transcription factor, SBP-box
PfamPF031102.7E-16248IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.58E-15550IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MRSLSVPFRG VDSRFCQQCG RFQELSAFDG EHRSCRERLL RHAGRRRRQS FLNSISNRAL  60
GRSSDEDSHG TPGTSKSGWW PGVVPVSAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011401669.19e-59Squamosa promoter-binding-like protein 9
TrEMBLA0A087SSC92e-57A0A087SSC9_AUXPR; Squamosa promoter-binding-like protein 9
STRINGA0A087SSC94e-58(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.12e-07squamosa promoter binding protein-like 15