PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

XP_011401672.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella

Family

Protein Properties

Length: 184aa MW: 20058.8 Da PI: 6.8862

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011401672.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.3e-06	41	56	11	26
GTS--TTTTT-SS-SS CS zf-CCCH 11 rtGtCkyGdrCkFaHg 26 + G C +Gd C++aHg XP_011401672.1 41 KEGSCVRGDACPYAHG 56 44*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.582	30	58	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MASIGGAPTT QLHGQDLGFD RAFDINDPCF STDQFRMYEF KEGSCVRGDA CPYAHGIFEC 60 WLHPTRYRTQ MCTDGPRCQR RVCFFAHLEG EVRLPEGNAP LLSAELQSSL AAGAHCLEGV 120 PLHISSGSLG VCAARECACQ ADAPWCAPRN PNPMVPLSPH PAPPTLSFLS CACAQRHWRS 180 RAPV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011401672.1	1e-134	Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A087S9Y4	1e-133	A0A087S9Y4_AUXPR; Zinc finger CCCH domain-containing protein 30
STRING	A0A087S9Y4	1e-134	(Auxenochlorella protothecoides)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP60	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25900.2	6e-23	C3H family protein

Link Out ? help Back to Top
Entrez Gene	23611416