PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011401790.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family AP2
Protein Properties Length: 682aa    MW: 71541 Da    PI: 6.8182
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011401790.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.15.2e-1467118154
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkle 54 
                     s+y+GV++d+k+ +W+++I++        +  +s+g+++t+e Aa+a+++a+  l 
  XP_011401790.1  67 SRYRGVSYDRKKAKWRVQIKV----AalGKSGVSVGYYDTEEAAARAYDRAAIGLL 118
                     79*******************....44446*********************98766 PP
2AP221.84.6e-07174223155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s++ GV    ++++W A+I +       k  +lg++ t+ eAa+ +++   +l+g
  XP_011401790.1 174 SRFMGVGSSNRKNQWQARILVH-----GKVTHLGYYETEAEAARVYDRVSIALHG 223
                     678899777789*********4.....4**********99*******99888886 PP
3AP223.61.3e-07264306150
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                     s+y+GV+  kk+grW+A +++      r+  + + f+++eeAa+a++ a 
  XP_011401790.1 264 SRYRGVS--KKKGRWEAKVMVN-----RRWAYRELFDSEEEAARAYDSAL 306
                     79****8..557******9993.....5888999*************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.81E-1067122IPR016177DNA-binding domain
PfamPF008471.5E-967115IPR001471AP2/ERF domain
PROSITE profilePS5103214.14468130IPR001471AP2/ERF domain
SMARTSM003807.1E-568136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-1068122IPR001471AP2/ERF domain
PROSITE profilePS5103211.759175231IPR001471AP2/ERF domain
SMARTSM003801.2E-4175237IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-11175232IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-9176232IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-7264321IPR016177DNA-binding domain
PROSITE profilePS5103212.418265321IPR001471AP2/ERF domain
SMARTSM003804.1E-4265327IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-7265322IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MAYPAGPWFD PGVFGLPAAV PTQSSVRSAS PSHTHSGGTP SFSGSMGAAF GTNPHEAYGG  60
QPGPAGSRYR GVSYDRKKAK WRVQIKVAAL GKSGVSVGYY DTEEAAARAY DRAAIGLLGR  120
DSHSLQTNYG LGDYAGESIP RLAGKSREEV KTTLKSERIK AAPRRRFTSR QRTSRFMGVG  180
SSNRKNQWQA RILVHGKVTH LGYYETEAEA ARVYDRVSIA LHGDAAQTNF PAAEYPRDEL  240
RAFGGLERED LQRALGVKPM DKSSRYRGVS KKKGRWEAKV MVNRRWAYRE LFDSEEEAAR  300
AYDSALWRLK PKEARSYVNF KDEASARAGG GGHAGGGEGA GASDASDADP DLSSGEEDEA  360
SDAGSEFSGS ELGLGFSLAA TGARPRSRRV GSAPNLARWA MSQQAAGGAG AGAWPPGGWA  420
TGGGAAGPPL ARSFSGTPSE NAPVDEEGAR ALSDPLLDRF GSGVGGAVGG APRRPPAAAT  480
LGKRDAPGAR ALPRTASEPH FPSVKLEEGW TPAPVLGEVA ELLYDDDFFA LAFEGGGGAT  540
PGTGPARGGG SGPAAAALTF DMDFETAGLL DFIKDMPDAG AGPSLGKSRS AVDLSSWDPA  600
SADGSGGAKL GPLGHPIRRI NTFATKLPTF EEVEERAAEG GYASDHLTPR KNGNQGEDDL  660
VAQLMEPSTS QMEHDYSMDL LT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011401790.10.0AP2-like ethylene-responsive transcription factor TOE3
TrEMBLA0A087SSP10.0A0A087SSP1_AUXPR; AP2-like ethylene-responsive transcription factor TOE3
STRINGA0A087SSP10.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP624466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.15e-16target of early activation tagged (EAT) 3