PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011401860.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family CPP
Protein Properties Length: 477aa    MW: 48475.3 Da    PI: 7.3854
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011401860.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.51.7e-1598135340
             TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k+C+Ck+s+Clk+YC+Cfaag +C+  C C +C+N+ 
  XP_011401860.1  98 AKRCSCKRSQCLKMYCDCFAAGGFCGPGCGCLGCSNSA 135
                     589*********************************86 PP
2TCR43.85e-14166205240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCsee.CkCedCkNke 40 
                     +kkgC+Ck+skC+kkYCeCf+ag+kC+ + C+C++C+N+e
  XP_011401860.1 166 HKKGCRCKRSKCQKKYCECFQAGVKCNPDiCQCDGCENCE 205
                     89*************************877********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.4E-1596137IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163428.29997206IPR005172CRC domain
PfamPF036388.2E-1299134IPR005172CRC domain
SMARTSM011144.8E-8165207IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.2E-10167204IPR005172CRC domain
Gene3DG3DSA:1.10.1200.101.8E-25397477IPR009081Phosphopantetheine binding ACP domain
SuperFamilySSF473361.57E-18400475IPR009081Phosphopantetheine binding ACP domain
HamapMF_0121718.466402475IPR003231Acyl carrier protein (ACP)
TIGRFAMsTIGR005174.5E-24402473IPR003231Acyl carrier protein (ACP)
PROSITE profilePS5007520.8403472IPR009081Phosphopantetheine binding ACP domain
PfamPF005502.9E-13407471IPR009081Phosphopantetheine binding ACP domain
ProDomPD0008876.0E-12432474IPR003231Acyl carrier protein (ACP)
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAIEALAFLS RAARSGASVT GSPIVAKDEP FAAGLSPASR AAALGAATPL ASFGSQHANQ  60
AALPPSRPRA PGSVRAWPLP SDRALDGGGP LTEPTLAAKR CSCKRSQCLK MYCDCFAAGG  120
FCGPGCGCLG CSNSADAVDA VQEARSAVLA KDPTAFRAKV LNGEGHKKGC RCKRSKCQKK  180
YCECFQAGVK CNPDICQCDG CENCEGGAPP RPQPEGQASG QPAGIPAHGS EFLAAMAAAL  240
AVAPRQQVPG PHGAPLGPAL PVSLAPPVFA GVPLSLGGAS GQWHEGSLLS GQAPLPSPEV  300
DSNALPGAGR PSLARPGDVL LGACAAATAL LQPTRDTGGV GTTAGAPDRD VVGNMSLCMA  360
STRAVCAPRA SLRMQVTAWA PRLSAKPMRA QRLVCHAVDK ASVLSNVRSI IAEQLGTDLD  420
KVAADAKFSD LGADSLDTVE IMMALEEKFE LQLDEEGAEK ISTVQEAADL ISAQIGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-189920512122Protein lin-54 homolog
5fd3_B1e-189920512122Protein lin-54 homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011401860.10.0Lin-54-like protein
TrEMBLA0A087SSV90.0A0A087SSV9_AUXPR; Acyl carrier protein
STRINGA0A087SSV90.0(Auxenochlorella protothecoides)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.11e-17Tesmin/TSO1-like CXC domain-containing protein