PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

XP_011402196.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella

Family

Protein Properties

Length: 104aa MW: 11065.5 Da PI: 4.7727

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011402196.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	50.7	4.3e-16	2	83	3	84
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 ++d lP + +++ +k +lP ++s da +++ c ef+ +++s+a+ ++r kr ti++d ++ al +lGfe v p++ XP_011402196.1 2 DEDVSLPRTTIQKAVKGALPPGLRVSWDAIDVLTSCCNEFVHLISSQANVISERTKRSTITPDHVIQALEELGFETLVGPVQ 83 67999************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.7E-27	2	83	IPR009072	Histone-fold
SuperFamily	SSF47113	5.35E-24	3	84	IPR009072	Histone-fold
Pfam	PF00808	6.8E-14	6	70	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MDEDVSLPRT TIQKAVKGAL PPGLRVSWDA IDVLTSCCNE FVHLISSQAN VISERTKRST 60 ITPDHVIQAL EELGFETLVG PVQEGEGLGS VVKGNHATAG VWAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	2e-23	2	84	11	92	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011402196.1	2e-71	Protein Dr1
TrEMBL	A0A087STT9	5e-70	A0A087STT9_AUXPR; Protein Dr1
STRING	A0A087STT9	8e-71	(Auxenochlorella protothecoides)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2422	15	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	9e-23	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Entrez Gene	23616890