PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012567373.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 255aa    MW: 28733.1 Da    PI: 7.4992
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012567373.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-131471146
                     TSSS-HHHHHHHHHHHHHTTTT.............-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.............tWktIartmgkgRtlkqcksrwqk 46
                     rg WT+eE e +v++++ +  g              W+ Ia+ ++ +Rt +++k++w++
   XP_012567373.1 14 RGGWTPEENETFVEYINNHRHGswrtlpklagscfLWAVIASQLP-RRTNNEIKNYWNT 71
                     789*******************************99*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-17579IPR009057Homeodomain-like
PROSITE profilePS5129412.062977IPR017930Myb domain
SuperFamilySSF466899.66E-11978IPR009057Homeodomain-like
SMARTSM007171.3E-91375IPR001005SANT/Myb domain
PfamPF002495.2E-111472IPR001005SANT/Myb domain
CDDcd001674.34E-71771No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGKTKCCDQH GVKRGGWTPE ENETFVEYIN NHRHGSWRTL PKLAGSCFLW AVIASQLPRR  60
TNNEIKNYWN TQLKKRLPQS GSMMHSVVKP ESPSKYHTAQ WKSVRVEAET RLSMESSLLT  120
SLPTSESKTR SHYSLQLWNS EVGNLFRMIK GNSVVCRSNN VSEASLSSKL ESCSDVTLQV  180
KNIESGTLVN KSQEEQGIGY KPKLEDGTIE SKSSYYELLD SSDSALNIFL DMNDDQIGSS  240
GQNESFLDTL YGKFD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012567373.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027186745.10.0transcription factor MYB41-like
TrEMBLA0A3Q7YBP51e-180A0A3Q7YBP5_CICAR; transcription factor MYB41-like
STRINGXP_007143400.12e-80(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.18e-36myb domain protein 17