PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012567653.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 235aa    MW: 26754.4 Da    PI: 9.3639
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012567653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.92e-0690109120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  nL+ H+
  XP_012567653.1  90 FSCPVCLKTFNRYNNLQMHM 109
                     89*****************9 PP
2zf-C2H212.10.00059174196123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +Cgk+   k + ++H +++
  XP_012567653.1 174 FTCRKCGKPLAVKGDWRTHEKNC 196
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.35E-677112No hitNo description
PROSITE profilePS5015710.1890117IPR007087Zinc finger, C2H2
SMARTSM003550.1890112IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.9E-690109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM00355130137169IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.79E-5159194No hitNo description
SMARTSM00355160174194IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MNSSTNDLQP LPLLSSFLGS TSQEPLHQNE NHKSCYNNQA EDVTVALHIG LPDNSIESPI  60
DNGFVNVPTQ VPNNYWIPTH EQILIGFSHF SCPVCLKTFN RYNNLQMHMW GHGSQYRRGP  120
DSLKRTHPRP LLDIPCYCCS KGCKNNIEHP RAKPLKDFRT LQTHYKRKHG SKPFTCRKCG  180
KPLAVKGDWR THEKNCGKRW LCICGSDFKH KRSLKDHIKA FGFGHSPFSS SSDGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125DSLKRT
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012567653.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP7001601e-133FP700160.1 Medicago truncatula chromosome 5 clone mtf83-100f22, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012567653.11e-177protein TRANSPARENT TESTA 1
SwissprotQ8VWG35e-96TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A1S3DWQ91e-175A0A1S3DWQ9_CICAR; protein TRANSPARENT TESTA 1
STRINGXP_004516564.11e-177(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.19e-94C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]