PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012567867.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

SBP

Protein Properties

Length: 171aa MW: 19937.1 Da PI: 8.2299

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012567867.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.6	5.4e-41	55	129	2	76
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cq+e+C+ad++ k+yhrrhkvCevhskap+v+v+gl+qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk+ XP_012567867.1 55 CQAESCDADFTLSKRYHRRHKVCEVHSKAPSVVVAGLRQRFCQQCSRFHELMEFDEAKRSCRRRLARHNERRRKS 129 *************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.5E-33	50	116	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.872	52	129	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.96E-37	53	132	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.6E-31	55	128	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MERNQTSLKK DNIVEHEEEE DEEDESHEEN EKKKSACVNG KKRPSKSGRF SPPFCQAESC 60 DADFTLSKRY HRRHKVCEVH SKAPSVVVAG LRQRFCQQCS RFHELMEFDE AKRSCRRRLA 120 RHNERRRKSP SGICNEGSSS GIKGQQDRDG DWNKIEMDMS RSSSHEFLNF S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-34	47	128	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012567867.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010406	9e-36	AP010406.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT41F22, TM1776b, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004488736.1	1e-123	squamosa promoter-binding-like protein 3 isoform X1
Swissprot	Q38741	4e-38	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A1S2XHV9	1e-122	A0A1S2XHV9_CICAR; squamosa promoter-binding-like protein 3 isoform X1
STRING	XP_004488736.1	1e-122	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	4e-29	squamosa promoter binding protein-like 4

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]