PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012568000.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 243aa MW: 26367.5 Da PI: 5.7403

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012568000.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	39.2	2e-12	4	47	56	99
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 ++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e++l ++ XP_012568000.1 4 AIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGA 47 689***********************************998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.4E-7	4	43	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
LIAAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PITSEAAANG 60 RGPPLKAYDI RHVSKEENSA VSNETQQRVK TRSRVKRSNL AKPKLTTDNE EKSSNNKGIE 120 SGSVEPVEEV MNRSASHESS LSHQSEAVNA AAVDGESKES DESMASVETA ETSMNLFRDE 180 PESTRDLKRV DRTGESGEEN VGLELTLGFE PVSRVHHVVP VKKRRVELKD CGGGSWKIEL 240 GLP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012568000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012568000.2	1e-177	LOB domain-containing protein 41-like, partial
TrEMBL	A0A1S3DX18	1e-176	A0A1S3DX18_CICAR; LOB domain-containing protein 41-like
STRING	XP_004489144.1	1e-170	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-39	LOB domain-containing protein 41