PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012568171.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 261aa MW: 29168.3 Da PI: 7.9385

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012568171.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.9	2.8e-11	68	114	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+ErrRR+ri + +++Lr l+P + K++Ka+ L ++++ +k+L XP_012568171.1 68 KNHREAERRRRNRISDHLAKLRGLVPYS-----AKMDKATLLAEVIKQVKEL 114 58***********************6.....6**********998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.646	65	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.8E-9	68	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-12	69	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-12	69	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-10	71	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	6.14E-6	155	196	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MDYGSDISRI VFNAPSYGFG ASNGISRDGL VSPQSLVLDT EMRELVKSPP MVGKKKICDA 60 NKTLVALKNH REAERRRRNR ISDHLAKLRG LVPYSAKMDK ATLLAEVIKQ VKELKKNTEE 120 SSKGYLIPMD NDEVKVEIEP YENGGLNGSI PYKASICCDY RPELLSDLKQ TLDTLKVQLV 180 RAELSTLGDR VKNEFVYTCC KADIYNVELC QIIASNVHQA LSSVLDKGST SLDYSLRVSH 240 SFNQLQHQTS TLSCNHEFCS C

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012568171.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012568171.1	0.0	putative transcription factor bHLH107
TrEMBL	A0A1S3DZA0	0.0	A0A1S3DZA0_CICAR; putative transcription factor bHLH107
STRING	XP_004485888.1	1e-144	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8986	31	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-30	bHLH family protein